User:Michipanero/Drafts

Databases for oncogenomic research

The academia has already brought up several databases dedicated to cancer data and oncogenomic research. They can be a primary source of cancer data, offer a certain level of analysis (processed data) or even offer online data mining.

This table gives an overview over databases for that serve for oncogenomic research. Note that it may not be a comprehensive list!

Database	Institute / Organization	Alteration Types	Primary Source	Processed Data	Organisms	Cell lines	Public Data	Restricted Data
Catalogue Of Somatic Mutations In Cancer (COSMIC) →	Wellcome Trust Sanger Institute, UK	Mutation	No	Yes	Human	No	Yes	No
International Cancer Genome Consortium →	Worldwide	CNV, Mutation, Gene Expression	Yes	Yes	Human	No	Yes	Yes
Integrative Oncogenomics Cancer Browser (IntOGen) →	Universitat Pompeu Fabra, Spain	CNV, Mutation, Gene Expression	No	Yes	Human	No	Yes	No
Mouse Retrovirus Tagged Cancer Gene Database →	Institute of Molecular and Cell Biology, Singapore	Mutations	Yes	Yes	Mouse	No	Yes	No
Mouse Tumor Biology Database →	The Jackson Laboratory, USA	CNV, Mutation, Methylation, Gene Expression	No	No	Mouse	No	No	No
OncoDB.HCC →	Academia Sinica, Taiwan	CNV, Gene Expression, QTL	No	Yes	Human, Mouse, Rat	No	Yes	No
Oncomine →	Compendia Bioscience, Inc., USA	Gene Expression	No	Yes	Human	Yes	No	Yes
Oncoreveal →	Boğaziçi University, Turkey	Gene Expression	No	Yes	Human	No	Yes	No
Progenetix →	Universität Zürich, Switzerland	CNA	No	Yes	Human	No	Yes	No
The Cancer Genome Atlas →	National Cancer Institute, USA	CNV, Mutation, Methylation, Gene Expression, miRNA expression	Yes	Yes	Human	No	Yes	Yes
GSK Cancer Cell Line Genomic Profiling Data →	DUMMY		?	?	Human	?	?	?
Cancer Genome Anatomy Project →	DUMMY		?	?	Human	?	?	?
Cancer Genome Characterization Initiative →	DUMMY		?	?	Human	?	?	?

Notes